Scaffold Ga0316219_1000879

Overview

Basic Information

• Taxon OID: 3300031759
• Scaffold ID: Ga0316219_1000879
• Source Dataset Name: Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36584
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (77.42%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 46.0411
  • Long. (^o): -89.6861

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F021910	Metagenome	216	Y
F083914	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316219_100087915	F002539	AGGAGG	MNHHIWTASGTDITLRWRKAGWVPPSEIQSYKDKWKYFQELPLRSLDEQGKIEYEGTLKLNKIFRIK
Ga0316219_100087923	F021910	GGAGG	MNRADAYYEPNDYDDRSDEIEERTWQLLKVGGKFDYRTSGAISEALSEMGVDDSQALQDVIDSGDYEQLGKKLISMACEYMEGHAKKVAEFEIND
Ga0316219_100087961	F083914	AGGTGG	MATGPINTNIRYPQSQFLDPLTQRPAREWLIWLQNPNVVSQTVNYIIINGGQINNTPIGNITPSTGVFTDLTALLGIGGGQF