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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031759 Open in IMG/M |
| Scaffold ID | Ga0316219_1000326 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 67231 |
| Total Scaffold Genes | 129 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 106 (82.17%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021463 | Metagenome | 218 | Y |
| F040982 | Metagenome / Metatranscriptome | 160 | N |
| F075594 | Metagenome | 118 | N |
| F082043 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0316219_100032612 | F040982 | AGGA | MTRRKKRDLKAEGKWWSESQKLEAATTFLALGNGAQTAAVLDIPLATFNRWRYADWFKKMVEDLKAEDNLKLNARLSKLVSKALDVTEDRLTNGNYQYDPKTSELIRVPVSIKDASKVANDMMARKDIIEDKPMQEQIERTVDDRLAKLAEQFRTFAKPKEKDITPQPLVIDNAS |
| Ga0316219_100032670 | F075594 | AGGA | MSSVFSVTRDQIISLALRKLGVLELGSTPDSETVANASLALNLFVKQMQTEGLKLWTVNQLVLPLVNGQTQYSIGPISQNPTVDLDADKPLKVIQAWLRQTTVTPPIDTPVQLLSQQEYKTLGSKFSTGVANSIYYEIRQNTGNMYVYLTPDYNAALQYDLYFMAQQPIQDINYGSSVPNFPVEWFNTLVWNLADQLAIEYSLPAGHRQEIAMRAKSYREELTDWDVESVSTFFQADLRMANVTFGQPN |
| Ga0316219_100032671 | F021463 | N/A | MSDQLETRVVRLEVTQANHAEDIKELRETTIDLTSTMHSIEKNLSQIKWLAIGALAVIIAQTIGIDKAIKVLLGS |
| Ga0316219_100032677 | F082043 | AGG | VAESFSYKITTESELFTFDFTQVLAANETILTAVCTVIVMNGVDPTPSSILQSTAIIVNKTASQRVVAGLAEVTYRLEMTITTSLSNTYVGVGDLTIYDASQV |
| Ga0316219_100032694 | F040982 | AGGA | MARRKKRELKAEGKWWSESQKLEAATTFLALGNGAQTAAVLDIPLATFNRWRYTDWFKKIVDDLKAEDNLKLNARLTKLVSKALDVTEDRLDKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDLIESKPQQEQIEKTVDARLAALAEQFKQFAKPKEKDITPKPLVIENE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |