Basic Information | |
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Taxon OID | 3300031759 Open in IMG/M |
Scaffold ID | Ga0316219_1000326 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 67231 |
Total Scaffold Genes | 129 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 106 (82.17%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Microbial Communities From Trout Bog Lake Hypolimnion, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.0411 | Long. (o) | -89.6861 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F021463 | Metagenome | 218 | Y |
F040982 | Metagenome / Metatranscriptome | 160 | N |
F075594 | Metagenome | 118 | N |
F082043 | Metagenome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0316219_100032612 | F040982 | AGGA | MTRRKKRDLKAEGKWWSESQKLEAATTFLALGNGAQTAAVLDIPLATFNRWRYADWFKKMVEDLKAEDNLKLNARLSKLVSKALDVTEDRLTNGNYQYDPKTSELIRVPVSIKDASKVANDMMARKDIIEDKPMQEQIERTVDDRLAKLAEQFRTFAKPKEKDITPQPLVIDNAS |
Ga0316219_100032670 | F075594 | AGGA | MSSVFSVTRDQIISLALRKLGVLELGSTPDSETVANASLALNLFVKQMQTEGLKLWTVNQLVLPLVNGQTQYSIGPISQNPTVDLDADKPLKVIQAWLRQTTVTPPIDTPVQLLSQQEYKTLGSKFSTGVANSIYYEIRQNTGNMYVYLTPDYNAALQYDLYFMAQQPIQDINYGSSVPNFPVEWFNTLVWNLADQLAIEYSLPAGHRQEIAMRAKSYREELTDWDVESVSTFFQADLRMANVTFGQPN |
Ga0316219_100032671 | F021463 | N/A | MSDQLETRVVRLEVTQANHAEDIKELRETTIDLTSTMHSIEKNLSQIKWLAIGALAVIIAQTIGIDKAIKVLLGS |
Ga0316219_100032677 | F082043 | AGG | VAESFSYKITTESELFTFDFTQVLAANETILTAVCTVIVMNGVDPTPSSILQSTAIIVNKTASQRVVAGLAEVTYRLEMTITTSLSNTYVGVGDLTIYDASQV |
Ga0316219_100032694 | F040982 | AGGA | MARRKKRELKAEGKWWSESQKLEAATTFLALGNGAQTAAVLDIPLATFNRWRYTDWFKKIVDDLKAEDNLKLNARLTKLVSKALDVTEDRLDKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDLIESKPQQEQIEKTVDARLAALAEQFKQFAKPKEKDITPKPLVIENE |
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