Scaffold Ga0315907_10506452

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10506452
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 954
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007110	Metagenome / Metatranscriptome	357	Y
F007305	Metagenome / Metatranscriptome	353	Y
F084821	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_105064521	F007305	N/A	PIKTNARAYRIGEQFNLPKYKEFPFVHAESHLISKLLDRYNTIDPNWSVVVMRINRKGIILGSKPCENCGKILNAVGLTDLYYSNDDASFSDSVGFLIEAESLTVPMLMV
Ga0315907_105064522	F007110	AGGAG	MNCIYCNDVIPEGRVEFLVDTGRKITCKECTMESRAVGFMDWGHKTAPSLVMVPANARETIRILDRANRRAR
Ga0315907_105064523	F084821	AGGAG	MKNKMTWLDLYNFLYEKANDINGEGNFPWSENVTVFDFETLEYYNTDFIQMPDDKISLSVDTAQNMEKTNGF