Scaffold Ga0315907_10279833

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10279833
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1375
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000141	Metagenome / Metatranscriptome	1941	Y
F050976	Metagenome	144	N
F083918	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_102798332	F083918	GGGGG	MGYVEIIDGSGYQARLENDKITIEPTNDKCMACNDDRLLHDGQYLVCTQCHCRQ
Ga0315907_102798333	F000141	AGG	MVSIWFVPSATVGNKDITTMYPQFKCNGCKRDTEFLWLEQLETPEGFKAYQCMECGCTGVKNVVEALHIPDSDICRCDKCGSWKFETVVCHTCQLIGAK
Ga0315907_102798335	F050976	GGCGG	VIVEDQMFNYIKKRYLPDLERSQEFDTWDCISQQSRMYIELKARRNHYTELLIEKSKYESLTITAMRKNYTAWYINATPLGLWAFNLTKLSKPVWKDRPMPTSTEFADKSQRIKQVGYLKLVDG