Scaffold Ga0315907_10165345

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10165345
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1868
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003965	Metagenome / Metatranscriptome	459	Y
F009530	Metagenome / Metatranscriptome	316	Y
F029439	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_101653454	F003965	AGGA	MNSTIIQVCKTHVPNKSAISDVNDEQFTFCEVCENNIERWYNDSDPERLPMWTSWKVS
Ga0315907_101653456	F029439	AGG	MTTLNTITLEPSHAMASSNTGNPMVFRNTVGNYISRKAYLELLATKQGVVSHRYLSPNESRWVMSNMKESN
Ga0315907_101653457	F009530	AGGAG	MTITYSIWQGSRLLSIDNIATEIKAVDHLIASLNDSDLGKKVKFSANIMSIKVGE