Basic Information | |
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Taxon OID | 3300031758 Open in IMG/M |
Scaffold ID | Ga0315907_10147146 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1997 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001229 | Metagenome / Metatranscriptome | 741 | Y |
F005054 | Metagenome / Metatranscriptome | 413 | Y |
F016967 | Metagenome / Metatranscriptome | 243 | Y |
F025979 | Metagenome / Metatranscriptome | 199 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315907_101471461 | F016967 | GGAG | LDNSHLLVQASSGLERLMGGSGPGGVLKDSTVAQVSAYVYYQASVISKLTSSKQFQNAFTTTVFEQIEKDFGNYVDALARTRPKSLHHVYEWKKVGNPTARLFKVNKISEQGLSFRVNYDFKPSRSMVPTGKGKRRHMFINKAAVMEEGSPLVI |
Ga0315907_101471462 | F001229 | AGG | MNDLIDSVLSMHLDVYKQTEVQDPDTGAIVREWSYYKTVACHAKGVISNSATTRSSDKQIFSNKYINDQIIQVRTSERLTPREKVTNIRDNEGNVIWHEINFPSETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ |
Ga0315907_101471463 | F005054 | AGG | MAEILINTQSPITHQVFWNGDIAIPDNVPIAKLYDITNDPAISPAINPTHLLTLLTSVLDENNPGTYTVNIPYQYTNRNKTLRLVWEYQVGGTNVQRSDEVYVVTPYVDFNHVQDLGFSMDPSDPGYKSYKDLVRAERYARKQIEQHTGQSFYLYDDLYVVYGYDSDILPLPAKINTLHELYARDILLVDTINDIDNWNYPLEISETGYGIKINRAGMIDNTVYTANGMVPPSIHDYVSGVFQSGIPYKVQGKFGWEKVPDDVELAAIELMKDYFNKDAVWRNKYIKKISTFDWDFEYTGEAHTGTGNAYADKLLADYVLTTKVEII |
Ga0315907_101471464 | F025979 | N/A | FTKDHPFVAMNKDKAQEIFDKEEGFRLATPKEVQEYYN |
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