Scaffold Ga0315907_10138855

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10138855
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2065
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013526	Metagenome / Metatranscriptome	270	Y
F015730	Metagenome / Metatranscriptome	252	Y
F026861	Metagenome / Metatranscriptome	196	Y
F081257	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_101388551	F026861	AGGA	MKLDEFKKLIEAQRQEIKLTNLEKIAKIVSTTNTKKGNN
Ga0315907_101388553	F015730	AGGAG	MLTENTLNKIVFEYQHGGVKQYHPEISMVERKALLKYLFSIPNTCSNEKCEATHTA
Ga0315907_101388554	F013526	AGGA	MKKNVLISFVTDADTDLEAIFALNKVMYKLPESDVVKFDAFEVLDVVE
Ga0315907_101388557	F081257	AGGA	MKTLSYTAEKNGIEIEVLNRLMVSEYQINDLLDSLVASGYTINSTRVEDGDYSPHWQG