Scaffold Ga0315907_10091689

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10091689
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2611
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F014610	Metagenome / Metatranscriptome	261	N
F061810	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100916892	F001272	N/A	MIHIELTQEQANSLLQLIDIAIKAGGYQNAKVGVPLADIIIQADQPKPE
Ga0315907_100916895	F061810	AGGA	VGGGGVTPIDPPIIRRDLLQEDDFFVLLEDASKIVLSLGTYDRIATEQGTDLLLTEDSSKFILTVY
Ga0315907_100916897	F014610	N/A	FENKGRCIEHIAPMGTDSIVIKGERWTRQPVARFGVTGFARDAELKDHVKKGFSRLEDRQGSRFESTFTKNQIRKIWDI