NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10065276

Scaffold Ga0315907_10065276


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10065276 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3165
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F004666Metagenome / Metatranscriptome428Y
F012013Metagenome / Metatranscriptome284Y
F068492Metagenome / Metatranscriptome124Y
F083783Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100652762F000868AGGCGGMSSFLENENQMVIDAIYQEIGEHLVEQWVQSNLDEGQLYADYCFAQMSDDNYIKGRFNQFYDLNPNDQYYLEWDEEK
Ga0315907_100652763F083783AGGAGMETEYINRKTQLVTYLQLHAQSLNEDLSQLSNKMDSLDPASKDFAELDVEYNFTSGQVSATMHILEYVEEIM
Ga0315907_100652764F068492AGGAGVNSTQLEPRLQKLIDLGESGTDILHGELKNLMYKAEQEFLEAQRIEEENDYDDAMESMERKYWEGQCDALEHVYALTYQLAFAIQERTQKNG
Ga0315907_100652765F012013AGGAMAKLDLQEQTRRDDIYNELNEIVDKITTLPVFPSLLWVWTFDVLRNIYENNRYEDLAVNDYVDEAVPAGVTLKQIFDKFWEDVDGIGLSMDLGDEIIDETIRDWMRDNDFLVALDDDGWLDDEENEGENE
Ga0315907_100652766F001019GAGGMSSYAASLEILEVAYDVSPGGVRTFEIYDKSEMDPVQIPLFETESLTEAVEYCYNLGKDFTVRTYAEWEMREMLADI
Ga0315907_100652768F004666AGGAGMATKREYLAQKGITVGKRGRFSAAAKQALSEAESQGIKFTAELKTPKK
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