Scaffold Ga0315907_10051847

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10051847
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3607
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F085601	Metagenome	111	Y
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100518471	F085601	N/A	LIPRASMNYYVMQTSLARGSKPQLVHWAKTQDDAIAYARQQLDLWRETGVANPPRYTVHYSGQTTLQPLWDSLD
Ga0315907_1005184710	F001964	AGG	MSRNLFAPTRYKVQISGAIGWADLKQRTVSYETVIFATRKEAEQAAKDLNPNEYTQGRLRVVPKDMPEDYDVYPIPERTKANP
Ga0315907_100518473	F103133	N/A	MRYKIQLETPNGWSNLRESSDGGPYKTCFYPTRMDAVGAVEEFAELLESTRIVPANVPETENIYA
Ga0315907_100518477	F002227	AGG	MKLTIQSKANAQTIIDLFNAIINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREDGDRIMPRFEGNPDLETL