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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031758 Open in IMG/M |
| Scaffold ID | Ga0315907_10027099 Open in IMG/M |
| Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5218 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Lake Erie, Ohio | |||||||
| Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012214 | Metagenome | 282 | Y |
| F013504 | Metagenome | 270 | Y |
| F045619 | Metagenome / Metatranscriptome | 152 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0315907_100270992 | F013504 | AGGAG | VALKITAVNNTNGQQETQAYARITNFFGTKDQVQVQVEIHATEEARQAGWPSIQQQAHYVNMSDIQGDFIPALYNVLKTFTQYAGSTDV |
| Ga0315907_100270995 | F045619 | AGGAG | MSEGYNWTINSLQVMNTPEPQTVVMSNFTIAKDGQSVNYSVNLLPANPDSFTPFDQITQEQALAWTQAALGPERVTNMETEVDFLIAQAAVPTPQPAPLPWN |
| Ga0315907_100270996 | F012214 | GAG | MTQYSRLRTPFGQMSFTPDVPSNALGPNEYNSGKNIETDVRTIKKIFGEKEICSTITDMPIFMEGGFRSETNWVYVVATRNASNHGKWWLITSTGITNITPGVGANPAIYIPNYTDDINITTAWVGSVFFFNDGMNNPAYLLPTANEIVTFTNAAWNYDVGVTSTTAGFVRNFCSPNVGNILIAGNLTKVIGGTTFNYPTTVRWSQAFAGSGIPATWEPTLSNVANEQEVPVRGPLIDGFFFGGSFYVCSYWDTVVFSPISYQNSTAPIFGLRLFNQGRGLFNNNCWTNTDSNVYGIDARDIWVFNGSEFSSLGNQKVKDYFFANLNSTYAGRMFMVNNTQKYQIEIYYPDLNSTGWCNKMLSWRYDLQVWNAPKDIANACMGTEGPRWIDSSPDYFNFSSRAVVYARGGVSNSKLIETAIGNSFINSGAIDAQFERTNISLQTESGPVPYSSKVYVHRILPEIAGTGKIDITVGGANSTAQAAIYGQTGVTNIDTDTPWVTTQQNTFRTVAVKFGSNDATNTWKVSALNLQATVTEDAF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |