Scaffold Ga0315907_10024818

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10024818
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5490
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026004	Metagenome	199	Y
F042339	Metagenome	158	Y
F069698	Metagenome	123	N
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1002481811	F079655	AGAAG	MSEQKKETAMRRLSKALRRRFQGASVKISWIELDAFMMKAQMWEMENLINSYNEGYTDCKAGLPNKAENESNTNI
Ga0315907_100248185	F026004	N/A	MGKMTKLAIGLAVVIIALALIFSVRTCNRPVTNPAIKRLQDVNDSLYQIIEANNAKTDSLFLKIDSLQVHQDTIVQRQEITNEIYRNETYNILSASPTNATNQFRATLKKSDSLLKAGFYTRTYNLRSATFQSQLQ
Ga0315907_100248186	F042339	N/A	MLYWYQTAQEIDSLYQLERLKVTYYGKITGIQATSYETLAEIYANKQSIEKAIAAEKDNEIGQLKKRNRRLIISNTALTLGITGLAFSTIYFAIL
Ga0315907_100248187	F069698	N/A	MDFQPRDLVTIIGGAVSLTGLYYALKRDVVKVSASLKTVESYHKREVTMLAESIKDTKEEFNNKLNIMKDEQNKAIDKLEAKIDVIASQNMTISTNLAELAGYIRGTK