NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10024803

Scaffold Ga0315907_10024803


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10024803 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5492
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F065462Metagenome127Y
F070025Metagenome123Y
F071156Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1002480314F065462N/AMENKVSKTVTVTLVNISDVYDHLGLTDYEVEHIANLAWSNVSYGDATYTLVGNVYALDRMLYEYEDYHKNVIANKSMTRDDFANKFWEIVGEADYINLEY
Ga0315907_100248037F071156GAGVGERGAVTGEPVSRKPLYPEHGMVYDLAMMEAEEEYKAWVKSRKGKKGMKVFAVRSNKMENEDAAI
Ga0315907_100248038F070025GGAGMPLYKVEGVKGDHAISELATSETKAGWVAAFYVEAGYKVTITEVTPLTSGSL

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