NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10019838

Scaffold Ga0315907_10019838


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10019838 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6262
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F020667Metagenome222Y
F024098Metagenome207Y
F044982Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100198383F000557N/AMKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGFLGYFPKKYDGASHQERAELFKSHAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQAP
Ga0315907_100198385F044982GGAMEFDVFVGGSGKKLTDLQKQALADFGVSLADGAIENKSYALVTKWLEGVVRLAKQNLANANAIASNSLAQSITVEPITLTDSSFVVAIKANDYWKFVDLGVKGTQKSNRAPNSPFRFKGNPIPIRPIQEWIAFKGIPLQGRDKQAANRSFAINIARKISREGLRATNFMSNAATKEMVDVLTENIAEVLGKSISVATVR
Ga0315907_100198386F024098N/AMSIIVLSGSPQSATPVYNKMIFKVSGSLTSATNYRYVCDVKDSAGTTTLARLKCDKLPTTNYGFFDVSRVVETLMAPTVPTLAQVGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVSGVLAFAGNLEQLELADWSGGTYFPPAPLTANTGKSLTTTQDGTSVSNAIAVVYAESYAYLCYGKGSANTTNAVRVQYRDASNAVTREFFVSEGAASGSSIVRFGSGPMNLNALTSAQCSDGLAGSASFPILEGAGYSIEPIDTLNTGLPYYAVYYRLGPCERFNSIPVHFINKYGGIDSYTFTMKNRKRANVEREVYGYNSDVYATTTYNKMWAGSFDYVYALNSDWLTDAESEWLIEMVRSGQVWLELDGQLVEAVVNANQYQFVTRRNDRLTQLQLEVAVAYDNSIL
Ga0315907_100198387F020667N/AMSVTLIAYPLNDSNTEVPYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGTASSGYVYGVVDAAGFTDILAQNGGGWFQAPWWKLGPSIYVKKMVDLIFTEAGFRYSSTFFNSAFFNKLVMPYAAGTMPTNLSGSNILAQSTGNTGIFSELVEEKVLFSKDTPAPFYDNPGYWVASSSTFVAPSVDTRWNVRVSFTLSGSVASTNNNICRMAIRNPAQNTNFATVVNFSLKKNVVSVIDFTNVTIPAFSTANIQFLVEWDGIGGFTQNFTILSGATIQWTCLENPQSIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSVDWSQKSDENAEQVLTNGDPNAYTNIVFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTVKALQTGYRLAQYNLIEGQTEWAYQYGVSSTVSGNVALSSGILKMPFVSHIDNPYAPNVDLTFGQPRLVYYNAVNASGNPYAYTNNNLYNTYWLNYINETVSQEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLADFAATTTTPIANDPSALFNGPIDPDPVDPGYEPPVNPELPSEG

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