Scaffold Ga0315907_10018170

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10018170
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6594
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F002721	Metagenome / Metatranscriptome	534	Y
F051883	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001817010	F051883	N/A	MSYADLQSITLVGRIADLRTFQTEDDRECLAVTLYHRISQDATITVKFLNSNGLLTAYNNSNLVVGQELTVTGKLQAIRAFYMKDDALTPLKQPEFQLRVNDYAFGSKPQPKVQDTEPAVTSTKKAKAKPTLEPVEF
Ga0315907_100181702	F002721	N/A	MAKDARLDLGRYVQNPFNRQGQVTKRLDFNELFRAKPDNGGYPWNPSRFTEEDLTKRMMTRKQTLNPTLNFIGNSPFFDDNKEVTPQYEMFEGLGRFNRPIDYNFDEGRPNTEQRPQQQPDFNPQWIEAYRISPTLNPSKVAKNPMPRMKNPDPNGYLMALAEKRAENEAEGSASVAQLLSKQGPVSNQVDQKEEEEGQQTATAVETNTSPGKTVS
Ga0315907_100181705	F001806	N/A	MDAGIRQKRVEALETIKDKALGLAKEGRDSLEVRDFVTSAKKELAYELPDEESFKKAMNATLAYKRTKGE