Basic Information | |
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Taxon OID | 3300031758 Open in IMG/M |
Scaffold ID | Ga0315907_10017158 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6814 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 20 (86.96%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003961 | Metagenome / Metatranscriptome | 459 | Y |
F006842 | Metagenome | 363 | Y |
F017469 | Metagenome / Metatranscriptome | 240 | Y |
F027758 | Metagenome | 193 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315907_1001715810 | F017469 | GGAG | MKTICKFCGWEIKKPEWYNEYQGSYACDDCMMDQAIENEKERENSL |
Ga0315907_1001715813 | F006842 | AGGAG | MAYTPAICGDHLVPISECDCLNYLQELKTSAERLIQLAKEREEMSK |
Ga0315907_1001715817 | F027758 | AGGGGG | MIFLDLILVSFWVLGLFAFAGGIAWLLDQLISFHLAGMERVRKIQEKEREGAR |
Ga0315907_1001715823 | F003961 | AGGAGG | MAENSADIAKRIILNCVAEAFTIEQACASAGKSMKTYEYYRRTDKVFADKIDRTRLGLKDKQFALADAHDLSFADFRQRFLH |
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