NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10017158

Scaffold Ga0315907_10017158


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10017158 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6814
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (86.96%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003961Metagenome / Metatranscriptome459Y
F006842Metagenome363Y
F017469Metagenome / Metatranscriptome240Y
F027758Metagenome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001715810F017469GGAGMKTICKFCGWEIKKPEWYNEYQGSYACDDCMMDQAIENEKERENSL
Ga0315907_1001715813F006842AGGAGMAYTPAICGDHLVPISECDCLNYLQELKTSAERLIQLAKEREEMSK
Ga0315907_1001715817F027758AGGGGGMIFLDLILVSFWVLGLFAFAGGIAWLLDQLISFHLAGMERVRKIQEKEREGAR
Ga0315907_1001715823F003961AGGAGGMAENSADIAKRIILNCVAEAFTIEQACASAGKSMKTYEYYRRTDKVFADKIDRTRLGLKDKQFALADAHDLSFADFRQRFLH

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