NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10017098

Scaffold Ga0315907_10017098


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10017098 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6827
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003786Metagenome / Metatranscriptome468N
F008078Metagenome / Metatranscriptome339Y
F049620Metagenome / Metatranscriptome146N
F082235Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001709811F003786GGAMNLTKYQPHNQDEQAIIESRPNRIANIEPKDAFRNVLNVISSLFPLHGIDGDLTFYSTVTKEIVKTFGQIAANEIEIAFRLFAAQSLDLDDDVKFYGKANMHTIGKILNAYLIYRRKIIAAHDNEVAALRHNANMEEKARKTREELYANFPTMLKEFKGKDFSTVPLYWYDMCVQFNMIEYQEGEKRALWEEAQALALKEPPESMDLMTIRSHAKKIEQGNTRRAVVIAQQLAVWRKVLK
Ga0315907_1001709813F049620N/AMTPEERDEKIVSILTKICINVLVKNLFDKNGVKVYEEVLHELNQLPVNEEEYTRCNHAHSFLHKTAIEYLQKTIVFNEEYRK
Ga0315907_100170983F082235GGAMKWIDELKNDTNRDECLIIGSGASLDYLPYKKIANRFHLDGYTILVNEMWYDYEIPYDFCINHHSFKMQDDYLAKWQEDIFRNPYKHVLPEFDCNDERRGVTQMKGNYFKYKGMPVCESTKVYVKPIVEKIPNTLFVGGTILFDAIGLALHLGVKNIFLMGFDGGQFEGHTYYSKYRELCPEDPYFGTGHSIRTMNSFKSLQEFLKPRGITFTHLSARYGSSDLTHTNYEGLDYSIVL
Ga0315907_100170989F008078N/AMTQSPKEKAKELFTHYHNLIQDIGGELGQEILVSILARHCALFAAREVLKEKWNIEVSGSYDEYYYWEEVEHELENYEE
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