NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315907_10012255

Scaffold Ga0315907_10012255


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10012255 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8379
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015204Metagenome / Metatranscriptome256Y
F033010Metagenome / Metatranscriptome178Y
F038210Metagenome / Metatranscriptome166N
F046910Metagenome / Metatranscriptome150Y
F065707Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1001225511F038210GGAGGVALAVDLLHNVGMNIEKNIPLPGGVDPRERYPFPDMAVGDSFMILDKGWIKNLRSAAYMYSRRHPGTRFTCRRYGEGWRLWRVA
Ga0315907_1001225513F046910GGAGGMGAGAPMTNALKEILEVLGSRPMVQVVIITAGGVKYALIGPVIQDPRATEFGEVTEIEFGDLLPLEVAAKMLAGEHKEALGMSLQ
Ga0315907_1001225514F065707AGGAMRPATFSTENPPRPIDCVETKEYINGLRRRIEVQNDLMESLASQVTQLQRKNKKLETDIEKLCLDLGIMDGGPDVGWVQVPR
Ga0315907_1001225515F015204AGGAMTFTEWWSQLTKAEQKVIGEQNAKYVWEECQKYTLMTIEDACKAKVAYDQGFKDGRERFEINLGGYVLTPGLGPGMIWIEAASGEGGDFHIDELAEVIGKFYRGRF
Ga0315907_100122559F033010N/AMVELKVVKRGRKVNLSPHQVAFHIKHADLRCPTYILVQYQPAGTAHAKKSELLLYAGEQAIDLVNLGIDTPAMARWPWTAISWAELRNFLVAS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.