Scaffold Ga0315907_10011943

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0315907_10011943

Scaffold Ga0315907_10011943

Overview

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10011943 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	8515
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015072	Metagenome	257	Y
F054796	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1001194312	F054796	AGGTGG	MSRRAPSPQAVAYTCLASAWRDEIDDESRLLLEQAHDTIVSLMARLVATSKVLEVVEAEMASMRFPLLGDDDPGMAL
Ga0315907_100119434	F015072	AGGA	MNDPHHAEYLAAVAAMPEHTVSGGTTRLIDGQLVTTYAVGDRIRFIEKGQTLNGVVVEVLSDDTYHVRRHVPDHGNLHYAVTADQITPF

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.