Scaffold Ga0315907_10009009

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315907_10009009

Scaffold Ga0315907_10009009

Overview

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10009009 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10169
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (67.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070025	Metagenome	123	Y
F093760	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000900913	F093760	AGGAG	MPIRKTKEFLAIKPVTLTDTGEHRIHRRKWWAILILIVGGIMLAGKLPIPYSLAYALLLFGHLGMLHTFYDKRDIPMIMVNGVWVLIDALGMYRWFQ
Ga0315907_1000900939	F070025	GGAG	MPIFKVEGVKGDHRISEHASSETKAGWVAAFYVEAGYTVTITEVTPLDKQD

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