NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10009009

Scaffold Ga0315907_10009009


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10009009 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10169
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (67.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070025Metagenome123Y
F093760Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000900913F093760AGGAGMPIRKTKEFLAIKPVTLTDTGEHRIHRRKWWAILILIVGGIMLAGKLPIPYSLAYALLLFGHLGMLHTFYDKRDIPMIMVNGVWVLIDALGMYRWFQ
Ga0315907_1000900939F070025GGAGMPIFKVEGVKGDHRISEHASSETKAGWVAAFYVEAGYTVTITEVTPLDKQD

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