Scaffold Ga0315907_10006897

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10006897
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11938
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (76.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033780	Metagenome	176	Y
F045719	Metagenome / Metatranscriptome	152	Y
F060870	Metagenome	132	Y
F078657	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000689712	F045719	GGAG	MSASWYKLKDESWGVKVRHEGQSGEQVEVTNKKGETKTVWLVARIAKFDDAQLWSVSNDAPPAAPKTLDEEPF
Ga0315907_1000689713	F078657	AGGAGG	VTDNQSIFYEAWISDLQRDLDSLREDKRELLRKVAQLEHLIAEYGNKLTNLIQQRGDE
Ga0315907_1000689721	F033780	AGGA	MSCPWSLVAVHWIDAFDSSNGWINTKDYKPKTQHVVSVGWLWPDLLDGYVSVTCSWCPGEEPELDTVGMVTHIPQGMVQRVSILGEPDWNI
Ga0315907_1000689726	F060870	GAG	VDGGWALVLAAVVTAVGGIIVTVLQQFKKENHTDHQIVVGLLQVLRKSQMRVEDKVDRVDERLTSHLDSHASEGILDNGRTVHQNGVEATSKVS