Basic Information | |
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Taxon OID | 3300031758 Open in IMG/M |
Scaffold ID | Ga0315907_10006603 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12262 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (81.25%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001464 | Metagenome / Metatranscriptome | 689 | Y |
F002501 | Metagenome / Metatranscriptome | 553 | Y |
F004006 | Metagenome / Metatranscriptome | 457 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0315907_1000660314 | F004006 | AGGA | MTNDIEQLVASISLNKVLIAILEEHKQLSVPTLRFLESKDTDKELVIDYDESGPSFTFSLKEREQENDN |
Ga0315907_100066036 | F002501 | GGA | MMKCQRCKGRVFIDRVFSQKLHIELFCILCGKRWMINKELNAFAKWLEQKDRDHAKSYSISS |
Ga0315907_100066037 | F001464 | N/A | MVRTKRQRPRKKLLYFFLNGKIHKVVRASKARDELVAWCYPDKKRVMYSYSQVKKNMGNAYTIKQVCEILGRHRVTVEEYILQGKIKEPQRVYPISNPDSSWYKFMFSESDIYDLHQFILDAGYTKDFPSKAELTALLKHNLILYTKTDEGGFVPVWKAE |
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