Scaffold Ga0315907_10006603

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10006603
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12262
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001464	Metagenome / Metatranscriptome	689	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004006	Metagenome / Metatranscriptome	457	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000660314	F004006	AGGA	MTNDIEQLVASISLNKVLIAILEEHKQLSVPTLRFLESKDTDKELVIDYDESGPSFTFSLKEREQENDN
Ga0315907_100066036	F002501	GGA	MMKCQRCKGRVFIDRVFSQKLHIELFCILCGKRWMINKELNAFAKWLEQKDRDHAKSYSISS
Ga0315907_100066037	F001464	N/A	MVRTKRQRPRKKLLYFFLNGKIHKVVRASKARDELVAWCYPDKKRVMYSYSQVKKNMGNAYTIKQVCEILGRHRVTVEEYILQGKIKEPQRVYPISNPDSSWYKFMFSESDIYDLHQFILDAGYTKDFPSKAELTALLKHNLILYTKTDEGGFVPVWKAE