NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10006546

Scaffold Ga0315907_10006546


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10006546 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12323
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (6.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F010155Metagenome / Metatranscriptome307Y
F011844Metagenome / Metatranscriptome286Y
F079966Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000654610F011844N/AMAKIQGSTQSVDISTDNGSTWKSLICLRTSSVNGTVDSTVEQTNCGTFTSIGKPNMTVDFDAICETAPDGSEVSYSALLTPFRNGTQIAVRVQSPVFSGSSAGAAYYQSFDGYITSLTLNQSTTEFINFSGTISSNGVIDITA
Ga0315907_1000654611F010155N/AMKDSANNVRNIYVNALNGNITYNGKNVPVYGQPPFVTTPDRYVIINNIVEVANNTNDSFDNEVEVTIEIYSEQNKNNNVSQVDNIAGQILNILIPDTKINGFSDTDFYVFPMARTSSNYLPLWEGDNYIARKVITIRNLVNQK
Ga0315907_100065465F079966N/AMAEVVTAQGLVIAVTNADGNVYPFACTTTASITINRDFIELAPKTNGVFREYIKGRSGYSVSGSGLVKMVESYTQPITFFDTFIEGTDSEFIGYLDIIDASGNYKVYKFSCIVQDLTLTNATGQNASYSFTLQGTGPITEISVVDSYTVTSGKITSRSTASYKLIGVAIDGVWYYNYSVTDEGGGVFTITIGAAYNGETVKAAYLQLF
Ga0315907_100065468F004112GAGMPNEFYSLSPKHYSLMMKGHEDKKVDSYKQTRLLMFTMVRLMADPKTAPKTPEQLWELPGDENTTKIDEEEYRQLINRYRNGK
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