Scaffold Ga0315907_10005939

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10005939
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13096
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017468	Metagenome / Metatranscriptome	240	Y
F024819	Metagenome / Metatranscriptome	204	Y
F033006	Metagenome / Metatranscriptome	178	Y
F068608	Metagenome / Metatranscriptome	124	Y
F073287	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000593912	F017468	N/A	MKHWEYHPEPVEGCFGCKGLSIQMNAGDADSRKFMTNKRHNTELNAYKEAVRQGIQPAGTTMDKIQAAVNASEVLGKPYNAEKMPPAKHINKKTAAVMKELGA
Ga0315907_100059393	F024819	GAG	MSKFNDAIEKAMRILAEELEDSESQICTGWVLVSEWSDFEGTRYLMTDVSDNMNPWLAKGMLLSAEEYSYTPEEK
Ga0315907_100059394	F068608	AGGAG	MVSGGFRPTASQNDPMTVSPNGGNGQSGRFVAQKVAKATQLRPSGFAQGENTAMAQQISEGGNVSTTANAANPASQLPKPGAGEGMAQLLGAISPLDAEPDTYLPATDGVDFGSGRGSEALPPSINPNNRQIENVDLVKRYLPDLLNAARMPGAPDSYKRMVNALMRELM
Ga0315907_100059395	F033006	GGAG	MQWMENTFFDHLDRFGNSLGYENFGIAFMLSMVPWDSPTDRDNFIREITGQDVKGGEPSNFNPEYLEF
Ga0315907_100059397	F073287	N/A	MPDANGNLVKKDAAIVKKTFSKLSEKAQTALAQYIITVQNRQPTDAARKTVFNNIIDAAVASYKEGKKQTPWDVLQIQLDNAPRQTNATYSYTNYDKITSDAILQNAARELGFTEGSFAQFGEQDLADFYEKLSAAAKAGGKTTQVITKPDGTQETVTTPGLFDAKTFAQNYLWTKVNVGDAKTLPTSVIDKIGTLKTLLKANGLGYFGDKEIANYALQLTKGEMSLDKLQAEFNAKAAEIYPLFADRLKANPSLTVMDLAQPYIGRMAKYWEIDPSTIDLDNPDLDKFLRPDGTAGKVPMGSLADFETYLKFHPNSEKAQWKIQGSRDLATGLASAMGFGV