Scaffold Ga0315907_10005314

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10005314
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14110
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012570	Metagenome	279	Y
F018535	Metagenome / Metatranscriptome	234	Y
F028501	Metagenome / Metatranscriptome	191	Y
F041172	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000531410	F012570	GGAG	MQTIKIDGTTYKVKFDRDPVELAKTARKAWKPKKPKDLRKFPTWTPTVSTADYIRRFDALNFLQSVDYTGASTESAAQYDYTMPLFEVIDENAN
Ga0315907_1000531411	F041172	GAGG	MAKLKTAILRAQETAEMTGSNESLLWQARALLENANAESAEKALHLINTYLMESELCKR
Ga0315907_1000531413	F028501	GGAGG	MKTITAKYTGTCAATGARILAGDLIQWSKGRTVLLERRRTAVDTITLYGENGAHTYYQNARGRCIDAPCCGCCTL
Ga0315907_100053149	F018535	GAGG	MKTQIDTSAPWYPAHLWPYTYHHGDTELLCFVDWEPADRSVGFAGNAWLIHAYAGGVDIVDLLKDQIVKDIEREAAEALQEGPTC