Scaffold Ga0315907_10005014

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10005014
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14622
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (14.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F047578	Metagenome / Metatranscriptome	149	Y
F048842	Metagenome / Metatranscriptome	147	Y
F060730	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000501418	F000716	N/A	MEKLKKQVRNYQLYAGKTYVQYESDGYSAYQNYLYKRALYGLDALTEKELATMCSKKKQRIINVYKRAQVTLNKFKQQLTIKYSNLIFEKMFPNSPITQFLLADTETDEKFKNTLTFKDLGIEKQDIIAIFIAEGILPKNFLDLKDAPVTLPRLKNEAKA
Ga0315907_1000501422	F047578	AGTAGG	MQMKAVCIDASNKPSKVPVEQWIKEGEAYTIIKVVKMGLQDGKYGVLLKEVQMSEDCFPYEYYDLDRFLPLDIRVYEAAEEKEQVLEADLELI
Ga0315907_1000501424	F060730	N/A	MGRMKEVYMQIIQANEGEVPEELTIADVARMKELEIFNWEQYEREQERIRVFRVKQENPREITKVAQSREFWEEELRKGQISAITKGKQ
Ga0315907_1000501427	F048842	N/A	MKDRNWVVILPILFYVLAGFGYIRCAYKMFTCNWEPIGKAEVVYTIGTFTGAGVVIGYFDIEDK