Scaffold Ga0315907_10004755

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10004755
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15090
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (85.19%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025740	Metagenome	200	Y
F033788	Metagenome	176	Y
F034180	Metagenome / Metatranscriptome	175	Y
F042898	Metagenome	157	Y
F059635	Metagenome	133	Y
F065777	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000475516	F034180	AGGAG	VNIKKISLAVAGALLVVGCASNNGIIKNADLKPETDSIRPKPVSTVFHRPQGTMTITFSPDGKFVEISSKGTAPIAGNNAFSIEQAAQVAQLRAKRNIAEFISTQLNTTRSVKVLSTAVQKSLENTSNGMVEEVKVDDKDFDVNGDPVIINAYNDGSKDTAPKPAVEGNPNTNSEKIAEIVRENITTSSTALLRGSVIVDEKIDQAGRTIVVEIKTGVQNINAANELRRLMGSN
Ga0315907_1000475518	F059635	AGGAG	VKLKSIWADIKLFALNKIHWLKLFLQHLTHDLKLDGNHDLRIFVFVFVYIVFSAVGAYNFAHLAAFLYIVWLLERRHGN
Ga0315907_1000475521	F042898	N/A	MNKSKLTIRVQDSEKINSIAEWCKDNLDKHEWDMTPIHLFKPDYRFHFECEKTRIQVILQHL
Ga0315907_1000475522	F033788	AGG	MQFLTNILIAYGVISMIFTTVFLIGLVRNIRREIDLIEDVSRFKKTVKLVYVEQVDGMFRMHDKFTHHYICQASSEKELWETADAMFPNVKIMSTSIEAEVTKL
Ga0315907_100047558	F065777	GAG	MIEELKQLSTKEVMTMIEGSVKAIVDNPDYFYNSNVGPQYSKLTPKGCDMVLKTMTALLPLLAQAKERDLDDRAKSITWKSLQEQND
Ga0315907_100047559	F025740	AGGAG	MTNKQTLWSVFIVAVLVSLMLLAVIIKVDSQLEESKRAAVDLQRQIDKIKAEDQELRHQITKLTNADVAINKDIDVTQELQRKQAQVILDLKKGRKK