NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10004558

Scaffold Ga0315907_10004558


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10004558 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15518
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012017Metagenome / Metatranscriptome284N
F046325Metagenome / Metatranscriptome151N
F050991Metagenome / Metatranscriptome144N
F057334Metagenome / Metatranscriptome136N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000455812F057334AGGMITKRAVDEWLIEPDVEGVREYARLSVYAEPEGLNIDGQGLIPWSQLESSRLTYAIKMKKRHAAR
Ga0315907_1000455813F012017N/AMAQKRILIGTPLKGDIPKSYFRTSLQMATAHVPEVKLDWILLDGPAVQIARNEIAAYAVEQKFDELIFWDKDVLAMRNGEDVTGSALMRLIGHDRDIVTAVYSTRSLETHWHVQPIKGEEADESGLQRVERASIGFCKIKVPVFKKIAAQNPDRVAVLTDPNKPPRTIPELFPMELRGKNLPGYRLQQIWQALSEVKNDSVLRARIERELTIRYDEPNAYISEDYGFCDLARAAGYDIWMDTLMVLGHQASVVVPIESAKLLEMLSEPWRKEELAIIKQQMLEAQAAKKK
Ga0315907_100045585F046325N/AMVSDSGIVTQVPKEFVRKWWGEIVNGLPDEKAKVHEDQARLAAKMREQGSVRMDGLGQMAARINSRLFFRLQAQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNPARHGLTGGWMGKQKDA
Ga0315907_100045589F050991N/AMKKRRDPHLTSAEKFGRLRQAMFRLVGNDGFQDFIEELREMQHSTMIDLCADAVVKDERLTLAATGELRAYSQIIGLYDDFVQQQMQQAEIDAEQRAG
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