Basic Information | |
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Taxon OID | 3300031758 Open in IMG/M |
Scaffold ID | Ga0315907_10004013 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16802 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (31.03%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F031036 | Metagenome / Metatranscriptome | 183 | N |
F068607 | Metagenome | 124 | N |
F100734 | Metagenome | 102 | N |
F102866 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0315907_1000401311 | F100734 | N/A | MKTATIQHATGDGTWESAYGLMYSYELHLSNGEHIKVNAKKANAFASGQQINYELTGKTDKNQTPLAKIVSDFNQRPQGGGYTPQAPANNAGGKDRSILIQVAFKMAMDRVNADPTMKLTEVYELAKFMYDQMKQAHEQF |
Ga0315907_1000401319 | F031036 | N/A | MNAAQFITIFTGGNYAAPIWDAYEAYVLADSGTIEAEVCTTNAIANLL |
Ga0315907_1000401324 | F068607 | N/A | VNYLQYIYDAVNASTIVPVYSYAAPQGVAEDFIVIQLGGIEVSETKDEYKAERVSATLFMHFASADTAQAQLSQIRHNLQHYPRVMPLYEQYVMSDLGTLEGEDCAAEQMGVAAQTTFTLAYMTGAQFFYNEDDETVILAADFTFLINY |
Ga0315907_100040135 | F102866 | AGG | MRNLRKELEQVEAEMAELRHQAELLERLALYITRSKHHANTFYWAKHLEREKLIWELGDDFDPLTWETNFNIWKR |
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