NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10002694

Scaffold Ga0315907_10002694


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10002694 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21993
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (94.87%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009529Metagenome / Metatranscriptome316Y
F020352Metagenome224Y
F058137Metagenome135Y
F104729Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000269418F058137GGAMKKIRSIRVSEQLWRRAMVKAKSEGKTVSEVIVDFLKEFVK
Ga0315907_1000269423F104729AGGMSLFSVHNASDGTFVLYLEEQDANLDLLEDVVGQVPLLALSRLAEHSQIESLKSEQAARLLDKVRSQLPDVCVKVASITEDEALALAEQLIMSVKFARAVAGKSTKLELVK
Ga0315907_1000269436F020352GAGGMNQDFKPINCSRCGALIWAGISWAGFARRLDTPRLTIEEEVIKRLSGLMTYELHRTRVSFEAVERSLNRIRWAAPNKDRVILADHTCQGWRLFESEPPSYWSKLSTVLSTSQEPAF
Ga0315907_1000269437F009529AGGAGMQCNVCKSEIETECRSCFGRLRAILKELPQLQYEAGFYLEPSRTGSGAVTAERSIGINVNALDFSMATDLLAILHSWESIIRRERALTLPAFVIKEPTTHSEVLATCEFHIAHLSWTLQQPWALDFAGEVWGLHARGRAAAKKFKEQARRIPCPTDDCKRFVVIDVEQLSQDVSCFGCKQSWSVLRLVALAMSNPNRRFFLDVEAISAWLQMTQREVYRLVKKFDIEKRGSTYDLQAIMKAKQQNA
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