Scaffold Ga0315907_10001963

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001963
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26879
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (30.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005529	Metagenome / Metatranscriptome	397	Y
F008073	Metagenome	339	Y
F034898	Metagenome / Metatranscriptome	173	Y
F055561	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000196321	F005529	N/A	MPKGLPKSKLDYSLEIRYRLRDGNWSEWNNKGKGCFTSIEVVQRQIRLIAAAYQGREKEVRFEHNGKLCDFAGNVTNAVIKLI
Ga0315907_1000196325	F008073	N/A	MKAIIVKHLKKMEFVCGLKQFKEYKEQDATELINCLNDLFKKFGWMTEERVDYILQAGMRGQYGDFYHVNEKTVNGWINQYYQHHQSQIVMEIQNLHNKDREQSPEEIAHWNEIGKQTFKDNYQHAKETGTCRHLAEWGVYWFNRFQEKGILKPWLFNVEEIEQDVRKELRLTSRYVEESTVGAKTKNKIWKLFILDSIKENKKLDEII
Ga0315907_1000196327	F034898	N/A	MDGLTKEQIVRELQFRATQKYLIYLALQEIMLDNYEDCTFLKHYDHDLTVKHKNIINSLKRNATKAFRFLEGYDEGEATIKQFHDFVKLFERIHESIDLGGSVYTDCLAAVEQIINNYEKASTN
Ga0315907_100019634	F055561	N/A	MSFAEYQSIAYGHQMRESKQENLFRSLWVQLNNVNVTKKGDLIRKPEKFWKIPLLDAKPVKIPTKAEVAKAYEIGLQWQTLKFEEEANFDTITNKIQ