NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10001580

Scaffold Ga0315907_10001580


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10001580 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30598
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (74.55%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004344Metagenome / Metatranscriptome442Y
F009529Metagenome / Metatranscriptome316Y
F024097Metagenome / Metatranscriptome207N
F054028Metagenome140Y
F096878Metagenome / Metatranscriptome104N
F101146Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000158016F024097N/AMKWLRERGVSAERLTKAGSRDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYASARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
Ga0315907_1000158017F096878N/AVAIYLEERDANLDLVEDVLAAVPMAHLESIESLLITDLKSADAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLTTKLELVK
Ga0315907_1000158019F054028AGGAMKLVPTEEKITIKWFWVTTDGKKYRNNRGFVHNAWDVTCSCGWESRTGGAIKASVQRDVDSHKIFVHNYTFEMGA
Ga0315907_1000158042F004344AGGGGGMDGLNIKVKTTDGVDKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALKSNGHVVKPFGPEFLDTLESVSLDSNPNFESTETV
Ga0315907_1000158045F101146AGGAGMAYIVTSDREVCGKTTGDILTVKELQDAGVSAENLIAGNHIKASNTTQETPSIKTEIKEGATN
Ga0315907_100015805F009529AGGAGMNCNICQRATKKEGACIVCELKVKACLVELPALQHESSEHLAPARTGSGAVSAERSIGINVNALDFSMATDLLHILHGWEVPIRIGRGLTPPAYLDKEPTIEAEVDATCSFHLAHLEYTLFQPWAVEFAADVYGLHAKGRAAAKKFSEQARRIPCPSDECKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRHDIEKRGSLYNFGDILKVVQI

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