Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10001580 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10001580 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30598
Total Scaffold Genes	55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (74.55%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30598

Total Scaffold Genes

55 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (74.55%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004344	Metagenome / Metatranscriptome	442	Y
F009529	Metagenome / Metatranscriptome	316	Y
F024097	Metagenome / Metatranscriptome	207	N
F054028	Metagenome	140	Y
F096878	Metagenome / Metatranscriptome	104	N
F101146	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000158016	F024097	N/A	MKWLRERGVSAERLTKAGSRDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEAHNYASARGLKQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
Ga0315907_1000158017	F096878	N/A	VAIYLEERDANLDLVEDVLAAVPMAHLESIESLLITDLKSADAARMMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLTTKLELVK
Ga0315907_1000158019	F054028	AGGA	MKLVPTEEKITIKWFWVTTDGKKYRNNRGFVHNAWDVTCSCGWESRTGGAIKASVQRDVDSHKIFVHNYTFEMGA
Ga0315907_1000158042	F004344	AGGGGG	MDGLNIKVKTTDGVDKTFSLRPRIIVDFEQKYGKGLAKLIGEEQKLEHIYYLGWLALKSNGHVVKPFGPEFLDTLESVSLDSNPNFESTETV
Ga0315907_1000158045	F101146	AGGAG	MAYIVTSDREVCGKTTGDILTVKELQDAGVSAENLIAGNHIKASNTTQETPSIKTEIKEGATN
Ga0315907_100015805	F009529	AGGAG	MNCNICQRATKKEGACIVCELKVKACLVELPALQHESSEHLAPARTGSGAVSAERSIGINVNALDFSMATDLLHILHGWEVPIRIGRGLTPPAYLDKEPTIEAEVDATCSFHLAHLEYTLFQPWAVEFAADVYGLHAKGRAAAKKFSEQARRIPCPSDECKRFVVIDVENLSDEVSCFGCKQSWTVARLVKLAMSNPNRKFFLDVEAISLWLKISQREIYRIVKRHDIEKRGSLYNFGDILKVVQI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10001580

Overview

Ecosystem & Geography

Associated Families

Sequences