Scaffold Ga0315907_10001569

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001569
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30671
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (26.42%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F021113	Metagenome / Metatranscriptome	220	Y
F023350	Metagenome / Metatranscriptome	210	N
F028175	Metagenome / Metatranscriptome	192	Y
F036240	Metagenome / Metatranscriptome	170	N
F071242	Metagenome / Metatranscriptome	122	Y
F071250	Metagenome	122	N
F082704	Metagenome	113	N
F091602	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100015691	F071250	N/A	KSKTMKKLISLERRVENLLKKYKTLRNNNKALCVRVWEQQFEERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNYDDNKKKAQLIKPLLKR
Ga0315907_1000156913	F082704	N/A	MPESKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIEFSMKFYVPESKIKHSEQTST
Ga0315907_1000156914	F021113	AGGA	MRKNILAIALLLVGTTAIWTVVCYYWFGKKDAKYVHVEVQKQDSIINYNAGEYQMLLEETLELKEQLAYYETTQSSAKTTYQRTRDIVIVRDTINRVDVITLVNSCDSVIAADSLVINNLKEQINIEERKINNLQETVGAYEQKTDVLNEEINNLTSENKKLDKQKKRRNRALVVTSSVAILSTFVLSVLF
Ga0315907_1000156929	F071242	N/A	MEATSKVHLQNKAHEMVACLEFIKLNIKTDGESGKMANGKRKLKLWKHYAWKVTRISVNVAFWIFIFYKLLF
Ga0315907_100015693	F091602	N/A	MKSDLTFCPNCDKELLGERVDFVLQDQQFEDWDSAYEFLDNEGEIVLCDDCHEWDYADDDAKGEGWD
Ga0315907_1000156931	F028175	N/A	MAITIDDQPYEYTPIGQRLILVASSTNVANTGFRFVFDFGSFQVNVQPNAANKGVLDLAPIFRESLQHDASLLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVADGYKPNPNTRYALDGITKYLMSERTTDTHKWSEASSRGLSSDWVYIPTRLSDWGVVYAPSSSPLLVDNDFDIVIFSSYDNNDDLIDTQFLPLADNPSLVNVIGGYYANIDSWGGLDLTGAKYYTIQFGKETLFPVYTPASRLYCFYLVADDCKFDNVRLGWSNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGNYNASTFGFNTYDRGTTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0315907_1000156932	F036240	AGGA	MPNEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLKIKGSSINVSVYAKGKASKYFLFRENGVNGTQKSQGAPYSFKKGSGSKPAKGQMSPMQKAIYDWMSIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAMENIWDEYESKVVAAYEKDFTATIENQLNDIQ
Ga0315907_1000156945	F023350	N/A	LTLDHYIEGRYKHFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK
Ga0315907_100015696	F012871	GGA	MLRNASTQTLTITQRIDRAERESAFVADYDLPTFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEAKSQQIKENEMAVNDDSWRRMLKEDIDSFKQGKYTTLELRGVSMMRWLEESKRITAETFTDEEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGFRELYKLYLSKQ