NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315907_10001569

Scaffold Ga0315907_10001569


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10001569 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30671
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (26.42%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F021113Metagenome / Metatranscriptome220Y
F023350Metagenome / Metatranscriptome210N
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N
F071242Metagenome / Metatranscriptome122Y
F071250Metagenome122N
F082704Metagenome113N
F091602Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0315907_100015691F071250N/AKSKTMKKLISLERRVENLLKKYKTLRNNNKALCVRVWEQQFEERKDITSNFFAMYESGKYVSADNITRIARLVKEHNPELRGTNYDDNKKKAQLIKPLLKR
Ga0315907_1000156913F082704N/AMPESKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIEFSMKFYVPESKIKHSEQTST
Ga0315907_1000156914F021113AGGAMRKNILAIALLLVGTTAIWTVVCYYWFGKKDAKYVHVEVQKQDSIINYNAGEYQMLLEETLELKEQLAYYETTQSSAKTTYQRTRDIVIVRDTINRVDVITLVNSCDSVIAADSLVINNLKEQINIEERKINNLQETVGAYEQKTDVLNEEINNLTSENKKLDKQKKRRNRALVVTSSVAILSTFVLSVLF
Ga0315907_1000156929F071242N/AMEATSKVHLQNKAHEMVACLEFIKLNIKTDGESGKMANGKRKLKLWKHYAWKVTRISVNVAFWIFIFYKLLF
Ga0315907_100015693F091602N/AMKSDLTFCPNCDKELLGERVDFVLQDQQFEDWDSAYEFLDNEGEIVLCDDCHEWDYADDDAKGEGWD
Ga0315907_1000156931F028175N/AMAITIDDQPYEYTPIGQRLILVASSTNVANTGFRFVFDFGSFQVNVQPNAANKGVLDLAPIFRESLQHDASLLTTSADTENTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVADGYKPNPNTRYALDGITKYLMSERTTDTHKWSEASSRGLSSDWVYIPTRLSDWGVVYAPSSSPLLVDNDFDIVIFSSYDNNDDLIDTQFLPLADNPSLVNVIGGYYANIDSWGGLDLTGAKYYTIQFGKETLFPVYTPASRLYCFYLVADDCKFDNVRLGWSNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGNYNASTFGFNTYDRGTTDRYVTTTKGLQINSDWVSVGEFNLLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDERYSKLYNVTLNLKYSQPVGL
Ga0315907_1000156932F036240AGGAMPNEQSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGRNYTNAVASGTLEKSLAYRLKIKGSSINVSVYAKGKASKYFLFRENGVNGTQKSQGAPYSFKKGSGSKPAKGQMSPMQKAIYDWMSIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAMENIWDEYESKVVAAYEKDFTATIENQLNDIQ
Ga0315907_1000156945F023350N/ALTLDHYIEGRYKHFKELAYNIARKEPFYEDLLHDSLLSMFGSKHIENLIDTGDFEFYLIRVMYLSVNSPTSPFYKQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK
Ga0315907_100015696F012871GGAMLRNASTQTLTITQRIDRAERESAFVADYDLPTFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEAKSQQIKENEMAVNDDSWRRMLKEDIDSFKQGKYTTLELRGVSMMRWLEESKRITAETFTDEEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGFRELYKLYLSKQ

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