Scaffold Ga0315907_10001428

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001428
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32329
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027117	Metagenome	195	N
F064428	Metagenome	128	N
F066465	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000142811	F064428	N/A	MHQSDKMLAVKKLLDKLIKPKHPNIIRIDVRAYDTDRIGSIPHVYVYLKDHDDEDELNIDWEIKDVLRYLSIKNHMIRFTLGDDDSASL
Ga0315907_100014283	F027117	N/A	METSTEMIERVLEHLVSPKWNGIVEYKIEPSTHDDTGVLYYMIDVIFDIDTYWETLYSREYGHSSEMDEDISDNVRTAVKYLGINNVIVEIYVRNEHGFDIN
Ga0315907_100014284	F066465	AGAAG	MNLQEQVNRIQEMMGLNESNFLSAVQRRIRNVDELIFVSADEVNVQYSICEIDEDEFIEATISKTLDTIYWDYFSDVKSSSPEWGEASKMMDKYARDKYGEKLRLMHQYVCP