Scaffold Ga0315907_10001370

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001370
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33039
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (16.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002778	Metagenome / Metatranscriptome	530	N
F003786	Metagenome / Metatranscriptome	468	N
F009808	Metagenome	312	N
F019647	Metagenome / Metatranscriptome	228	N
F052594	Metagenome / Metatranscriptome	142	N
F059970	Metagenome / Metatranscriptome	133	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_100013701	F059970	N/A	MRAKTLKTKELQGTLIPSRIKTFSGSPVGKALLQLNEDEVKIYEKLKEHLQSHKASKDVDDIFLSIATRAIGHLLYNAEVLAVSGAVMVHPNGARQVSAEWTAFKQSMDMFLEISKSLGLDPGSRLKLDYFKDSNDNEDDEIAKLLKMN
Ga0315907_1000137019	F101173	GAG	MAVRYQTTVYNEKKRKITISIKDKDYSGAVGSFDTINIQLQYDSETSQGMERFAPIIGSRLRLNLIINSAALQTLLNDIGFAVEGRFSMELTSYEDDNTTVLFKWYGYIVTDLVEFEDVTTDIGFTAQIEAVDGLAWLKTLLYKSEVGPYLGQDTVVQHICNCLNQLDFVQENLVANNLPILHTVFNWHENSITYSANNDFALRTVISHRAFYHRDTKNNYTYQSCYDVLKKICQTFGARLLFSGNQYWFIQVNEYLNPKNHRYFKYNGFGIQSSGTFNLDFTTLNRQTDLANSKLMRLSGGRWSYYPPLKNAVIRYNYFGKQNLLAGKEYTYATNATPEQVITPTLDSTNVEARLSYTGILNFYAAVISPATFEPYQFVFAIKLASIINSFPLQGFASANWTLGSGWLIADGILEGTLAATEAYYTTFSVTANRKYYVNIKVKLDNTGELRLRLGGVTKTITESGDYEYIIESINTNTLKLDSISTPNFTGKITSLQVKQENKYLKRNVNYTTGFNFQLDAASWETSAAEYEFNVETVFADNAFVVNKTISFDTLDIPETAEYVWSMRLKEMRNEAGTNIISNYALSYTINNNYLEFLPDGTIGGQADIKEYGSDNDEKSSVVFDLDTYLGDGISATTNGALKVKEDAGTFKLSNTWDVSSGQGFNKVTQLLVNEVIKGQLRPLPRMIDMPFQNLSIDDVYLPHKVIEYSSGYYVFERGLYDLNTDIWRGDYFKIDEHA
Ga0315907_1000137026	F052594	N/A	MATKNYGLDKKQIALCEAMVTKYPKPIKTNNVVSSAATLVSFYNSIDENNRKYYEYMNPERMVSLLWQITKMNSEKEDVKESAVRLINKIMVKIVVN
Ga0315907_1000137029	F009808	N/A	MKNNFNNQNFEWLFQDITSSMPKIIFTGIIFTYLITAALNVYFLPLPLMLSIPASLMLQFGRFAVVFIDFLNPSDKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFYAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRSRRRRVVRETTTTNISSTQPIKFTMAVCFMFAVYLLPAQSNHFMAFNWMSVEKIGGDKLERTYYDRHEDKHYIDTITTDFLSSWNFWDGYTLPVSDNDLFMTYGTQTLKYNKKTQLWTYKGKTMDYVDLLKFLVRYTRKNFIKKKVQW
Ga0315907_1000137034	F002778	AGGA	VKEYNTQMMEIKAFCDEVNAWISTAPSAEHLEECDEYLRQLSAYYSRYTVISGMNESIYSQLLMMCIRDMAEEEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT
Ga0315907_1000137037	F019647	GAGG	MKIVKGIVKYGAGAPREGQYGPSINILVTLEDGSQVRVYGKPGDVIERYKSGQNIQLVDDKGKYKVVEEEMQQAAKQVQNIDVSEKPDLAAMVFEMSAIYSQAYIDIYNKMSEAGIPHENATAATSTIFIQVFQKLR
Ga0315907_1000137041	F003786	N/A	MSNLTQYQPRNSDEQAIISARSNRIANMEQKDAYKQTLSVISSVFPMYGIDGDIAFYANIAKEIVKTFGQIAANEIEIAFRLFSAESLELDEDIKFYGKANMHTIGKILNGYMVYRRRIIASHDNEVAALRLQAQMEEKGKAEREKLYAEFPTMIKEFAGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESMDLMTIRSHAKKIEQGNTKRAVVIAQKLAVWRKVIKK