Scaffold Ga0315907_10001323

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10001323
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33742
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (84.48%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049630	Metagenome	146	N
F061843	Metagenome	131	N
F064712	Metagenome	128	N
F072102	Metagenome	121	N
F077222	Metagenome	117	Y
F093846	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000132318	F072102	AGG	MADEVIVLTGIKETIDALKQFDKAAARKFNKVINDALTRAERSADNLVVQFTNPVYGTPMRGWRKTPAANPRTRGGAGWPAWDVSEIQTGIVKSRAQGKVRGDYTTSAGALINKSAAGAIFEVAGRRGNASRNQFIRYLSNSFGKASRLIWAVVDKDKEAIQKRVAAALEDAKKTLQNNLNSRS
Ga0315907_1000132335	F077222	AGGA	MRILWAVLTAIVAVGKGRRPLPWAILGFMGGWVALGLACLSPQRPLRPVPPWLLNLGYQSQAKRAFAKIDTPKDLLG
Ga0315907_1000132341	F093846	AGGGGG	MEIAIMIGAAGLALIGASLASILTNGTDDWAGQVKKAEKSRAKMKKALSK
Ga0315907_1000132342	F061843	AGG	MSDNWSEIFKIFISNDGSYYLYLEEQEACVDLIENISDEIELTDFAEIKKASKADLRDDFATMRLDNIRKNLPPMALKVAKLTERELLDLAQEIIQTVQDKNKIRLEIVK
Ga0315907_1000132354	F064712	GAGG	MNYLDFKPINCRACGKLIWAGHSSAGFPTKLDIERLNILEEIVKKVSQIRTYEAHRTLVSFEVTPRMGAYVIGSEFKPERVILAEHKCSTFTLFETEPPDYWNRKINHKPTLEEIPF
Ga0315907_1000132355	F049630	AGGAG	MNCQVCSRTTQVEGACRSCFMKVKSSLVEIPDLHFEAQMFITPGRSGSGKASAERSIGVNVAALDFSVATDLLRTLHSWEVIIRSDRKLTPPALVPKEPTIEAEVQATVDFHCSHLEWSLSQEWAVEFASEVYGLHAKGRSAAKRFTEQARRIPCPTDDCKRFVVIDVENLMDDVTCFGCKQSWSVLRLIALAMSNPDRKFYLDVEAIAAWMGTTERTVYNLIKTHKIERRGSLYDLSAIIKAKNSTL