Scaffold Ga0315907

Basic Information
Taxon OID	3300031758 Open in IMG/M
Scaffold ID	Ga0315907_10000672 Open in IMG/M
Source Dataset Name	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031758 Open in IMG/M

Scaffold ID

Ga0315907_10000672 Open in IMG/M

Source Dataset Name

Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	48574
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (16.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

48574

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (16.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Lake Erie, Ohio
Coordinates	Lat. (^o)	41.6898	Long. (^o)	-83.2813	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Lake Erie, Ohio

Coordinates

Lat. (^o)

41.6898

Long. (^o)

-83.2813

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F004953	Metagenome / Metatranscriptome	417	Y
F010462	Metagenome / Metatranscriptome	303	Y
F048248	Metagenome / Metatranscriptome	148	Y
F083779	Metagenome / Metatranscriptome	112	Y
F103124	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_1000067211	F000716	N/A	MIKMEKLKQDYQNYQLNAGKTYMQYEQDKYSPYQNYLYKRALYGLEALNKEELATICSKKKQRIINVYKRAQSVLNIVKQKITIEYTNLIFEALFPKSPMTQMFLENSETDEKFKNTLTFKDLNMNKDFIIAIFITEGILPKNFLSLQEEPVTLPRLKNANKA
Ga0315907_1000067241	F083779	N/A	MVKMIFDKEETRNLMMMLQSQDADNHVIAFETLKNVDFDKYIGELLVLYKFGGHTMENWMINCKKIATKILAIKPETPLSSPNTLSLITKHKGSKASVELFMEFFIKDMTRMLGSIGYPTDKFEIDIKFKDDGQTTES
Ga0315907_1000067247	F004953	GAG	MMIVQSTWQDKQTFRLIPIAESCPYVECIFDPDSKVFVIVSKIRKTSLHMLPKLDEYGIAISGNRGTKQERHKIEVFQEFYIEDLNAIEELIKTFAVNAEFDYKTFMNN
Ga0315907_1000067250	F103124	N/A	MHPVAFKKALIEAYLAGASSMYCGCYEMQTKASAREWFDNEYGEQESEDCDCCEEDE
Ga0315907_100006728	F048248	AGAAG	MISKNMMISVSYDDTDIARAISKIIKDSNAEEFVKLLTPMLCSNAQATDYFFKLMLGDKLPDIIPNGTLCKIPVDNLGWGSNKEDIREKFADEDGKVVVTIKEFRGYHEYSQYHIEYTDVLDNGTTKKDTTYVQGKDLEVIEEF
Ga0315907_100006729	F010462	N/A	MQVMLYQLPNGKVVHLSIEEYLDLTDEDIQYLMSIDYGEHIRDPFSGSAVENNTKEKYYDFEFLPQDDEDINNIISDDIPFDDIIDLSDNLDI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315907_10000672

Overview

Ecosystem & Geography

Associated Families

Sequences