NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315907_10000672

Scaffold Ga0315907_10000672


Overview

Basic Information
Taxon OID3300031758 Open in IMG/M
Scaffold IDGa0315907_10000672 Open in IMG/M
Source Dataset NameFreshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)48574
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (16.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Lake Erie, Ohio
CoordinatesLat. (o)41.6898Long. (o)-83.2813Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F004953Metagenome / Metatranscriptome417Y
F010462Metagenome / Metatranscriptome303Y
F048248Metagenome / Metatranscriptome148Y
F083779Metagenome / Metatranscriptome112Y
F103124Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0315907_1000067211F000716N/AMIKMEKLKQDYQNYQLNAGKTYMQYEQDKYSPYQNYLYKRALYGLEALNKEELATICSKKKQRIINVYKRAQSVLNIVKQKITIEYTNLIFEALFPKSPMTQMFLENSETDEKFKNTLTFKDLNMNKDFIIAIFITEGILPKNFLSLQEEPVTLPRLKNANKA
Ga0315907_1000067241F083779N/AMVKMIFDKEETRNLMMMLQSQDADNHVIAFETLKNVDFDKYIGELLVLYKFGGHTMENWMINCKKIATKILAIKPETPLSSPNTLSLITKHKGSKASVELFMEFFIKDMTRMLGSIGYPTDKFEIDIKFKDDGQTTES
Ga0315907_1000067247F004953GAGMMIVQSTWQDKQTFRLIPIAESCPYVECIFDPDSKVFVIVSKIRKTSLHMLPKLDEYGIAISGNRGTKQERHKIEVFQEFYIEDLNAIEELIKTFAVNAEFDYKTFMNN
Ga0315907_1000067250F103124N/AMHPVAFKKALIEAYLAGASSMYCGCYEMQTKASAREWFDNEYGEQESEDCDCCEEDE
Ga0315907_100006728F048248AGAAGMISKNMMISVSYDDTDIARAISKIIKDSNAEEFVKLLTPMLCSNAQATDYFFKLMLGDKLPDIIPNGTLCKIPVDNLGWGSNKEDIREKFADEDGKVVVTIKEFRGYHEYSQYHIEYTDVLDNGTTKKDTTYVQGKDLEVIEEF
Ga0315907_100006729F010462N/AMQVMLYQLPNGKVVHLSIEEYLDLTDEDIQYLMSIDYGEHIRDPFSGSAVENNTKEKYYDFEFLPQDDEDINNIISDDIPFDDIIDLSDNLDI

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.