Basic Information | |
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Taxon OID | 3300031758 Open in IMG/M |
Scaffold ID | Ga0315907_10000672 Open in IMG/M |
Source Dataset Name | Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 48574 |
Total Scaffold Genes | 54 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (16.67%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Lake Erie, Ohio | |||||||
Coordinates | Lat. (o) | 41.6898 | Long. (o) | -83.2813 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000716 | Metagenome / Metatranscriptome | 923 | Y |
F004953 | Metagenome / Metatranscriptome | 417 | Y |
F010462 | Metagenome / Metatranscriptome | 303 | Y |
F048248 | Metagenome / Metatranscriptome | 148 | Y |
F083779 | Metagenome / Metatranscriptome | 112 | Y |
F103124 | Metagenome / Metatranscriptome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0315907_1000067211 | F000716 | N/A | MIKMEKLKQDYQNYQLNAGKTYMQYEQDKYSPYQNYLYKRALYGLEALNKEELATICSKKKQRIINVYKRAQSVLNIVKQKITIEYTNLIFEALFPKSPMTQMFLENSETDEKFKNTLTFKDLNMNKDFIIAIFITEGILPKNFLSLQEEPVTLPRLKNANKA |
Ga0315907_1000067241 | F083779 | N/A | MVKMIFDKEETRNLMMMLQSQDADNHVIAFETLKNVDFDKYIGELLVLYKFGGHTMENWMINCKKIATKILAIKPETPLSSPNTLSLITKHKGSKASVELFMEFFIKDMTRMLGSIGYPTDKFEIDIKFKDDGQTTES |
Ga0315907_1000067247 | F004953 | GAG | MMIVQSTWQDKQTFRLIPIAESCPYVECIFDPDSKVFVIVSKIRKTSLHMLPKLDEYGIAISGNRGTKQERHKIEVFQEFYIEDLNAIEELIKTFAVNAEFDYKTFMNN |
Ga0315907_1000067250 | F103124 | N/A | MHPVAFKKALIEAYLAGASSMYCGCYEMQTKASAREWFDNEYGEQESEDCDCCEEDE |
Ga0315907_100006728 | F048248 | AGAAG | MISKNMMISVSYDDTDIARAISKIIKDSNAEEFVKLLTPMLCSNAQATDYFFKLMLGDKLPDIIPNGTLCKIPVDNLGWGSNKEDIREKFADEDGKVVVTIKEFRGYHEYSQYHIEYTDVLDNGTTKKDTTYVQGKDLEVIEEF |
Ga0315907_100006729 | F010462 | N/A | MQVMLYQLPNGKVVHLSIEEYLDLTDEDIQYLMSIDYGEHIRDPFSGSAVENNTKEKYYDFEFLPQDDEDINNIISDDIPFDDIIDLSDNLDI |
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