Scaffold Ga0315907_10000127

Overview

Basic Information

• Taxon OID: 3300031758
• Scaffold ID: Ga0315907_10000127
• Source Dataset Name: Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109458
• Total Scaffold Genes: 169
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (72.19%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater → Freshwater Fungal Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Lake Erie, Ohio
• Coordinates
  • Lat. (^o): 41.6898
  • Long. (^o): -83.2813
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F002501	Metagenome / Metatranscriptome	553	Y
F003408	Metagenome / Metatranscriptome	488	Y
F003582	Metagenome / Metatranscriptome	478	Y
F008357	Metagenome / Metatranscriptome	334	Y
F008814	Metagenome / Metatranscriptome	327	Y
F010085	Metagenome / Metatranscriptome	308	Y
F014144	Metagenome / Metatranscriptome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315907_10000127104	F014144	AGGCGG	MSNRIVKCDMCNKEIELRWGIFGHDTLNRHIKAEHK
Ga0315907_10000127106	F002501	N/A	MERCSKYKMWCAKCSGRVFVDRVFSQKLHVELFCILCGKRWMINKETNRFGRWLEKQDREYAKNFSISS
Ga0315907_1000012711	F000450	AGGCGG	MGDRANFVFVDGAGDTICLYGHWAGYNMLGKLADAVIAARPRWNDESYATRITISHLIGDQWNMETGWGLQVNAIGDNEHKIAVINWQERTFSLHEQDDHRNLENKVLGMKNEAIFTMDLEAFCEKYAMERLLV
Ga0315907_10000127122	F003408	AGAAG	MPELIQTFKAMQKTEDEKRRFLASLQGVNLNEEEQTEGPTFDDIRRKALGINAKGDDIVSLQGQFALEAGFGIGAGLGYSKG
Ga0315907_10000127125	F000258	GGAGG	MTVNYKLDAMLEIRKFLWSELVDANIFDEDDYYSDNVGSTIVPIIPVQQAAEMNQFLSGKKHIIYDKIGMSYEDNWLICCEQILFTIYSTDISEINEIRNFMTDVFRRMDDSARDINRSGSLNDKFKFHSIFIADISPTEPSEELQGFLSTDVIIEAKYSRITDLNGRFQ
Ga0315907_10000127151	F008357	AGGAG	MAVQKNFEVDQNATFTFEVQYTEEDEVTPISLVNATAKMQVRDTKGGSKLAFTLTSPTGGITINGATGTLTVKMTPTQTNKLFYPKSSYDIMVVDSNGNKIKLLEGFLTLSRSVTI
Ga0315907_10000127156	F010085	AGGAG	LKKIQYVSKYIALSEEGLVPRIECPMDQGLLQSNLDMEDNIFLYCLSCSYKNFIGEKLYNSIKEKVDKNV
Ga0315907_1000012733	F001176	GAG	MSENGTGMATPPNNEPSGALTSQEVGRKNPTQGKFKSGIQDKRSLTRIDRNKHGIRRETNIGVKRTGRSKKV
Ga0315907_1000012743	F008814	N/A	MDKLTVLEEIIKEVSTELYQKWYNSVPESDKNEEASQAMAKNAGETTFFVIQTFMNKFNSAAEELKDK
Ga0315907_1000012749	F000671	GAGG	MDKVLCYSCNKSKNKLNVKKSTLLPINLLMCEGCINEKFEPRWLIIIAGRQSGADLVRDFILKKKYIGNEISASELLI
Ga0315907_1000012755	F003582	N/A	MNTYRVKLEVEVEVEAFDENDALDYANDIFGVDDEITNVKVISVKEK
Ga0315907_1000012775	F000376	AGGA	MNIYQEKAKECKCCGKHVPLPTTLKEYNGITVCPTTFSNIVEYARIWNAAGSRPSGSIRKHFSEYVQQIVENELNKKDI
Ga0315907_1000012778	F000369	N/A	MEIELSDHFDRMNKVVAELLKGNNPTQIASLTGFKRSDVVELIDEWKTVVYNDTSSKERAKEAISGADQHYSMLIKEAWKTVEDADQAGQLNVKANALKLISDIETKRITMLKEVGLLDNAELASQIAETEHKQEILVKILKEVTSSCPKCKMDVAKRLSQITGIVEPVIIDSGEAL
Ga0315907_100001278	F000311	GGA	MYIELTAPSQQALKAAYWEADLIGLDPQPMTSLTFNIGTGNIEKVSRIRDKFNLKETYVAEYEPTGYLRGL