Scaffold Ga0315328_10442796

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0315328_10442796

Scaffold Ga0315328_10442796

Overview

Basic Information
Taxon OID	3300031757 Open in IMG/M
Scaffold ID	Ga0315328_10442796 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	752
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001494	Metagenome	683	Y
F034711	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315328_104427961	F001494	N/A	MQKPKTDPVKDFQKQAVDQRVCLFYVADRVKGILEDSKTEEQLRDNLEEFKDECVHNIGTNALIERYEY
Ga0315328_104427963	F034711	AGG	MKLDKDIVKNKKQYSSFYTYDNAYGPGFGFQWKDIPAAHTNLVHKRVTSNKTWTKLVQGYGALG

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