Scaffold Ga0307475_10028139

Overview

Basic Information

• Taxon OID: 3300031754
• Scaffold ID: Ga0307475_10028139
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4044
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004875	Metagenome / Metatranscriptome	420	Y
F006600	Metagenome / Metatranscriptome	369	Y
F077604	Metagenome	117	Y
F081559	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307475_1002813910	F006600	AGGTGG	MEKSSSERVLVVESDDALRSSIVGALSDAGYEVSTDYREGMKSVLKLSPDAVVLGANPPQLDCCDLLSEIKGSER
Ga0307475_100281393	F077604	AGGAG	MKLKLITLFAVLVFASVGIVALAHAQDDETIKANIPFDFYAGKQRMPAGSYCIGIDLETGLISFTGESGKHKMFLMGTPDDDGDGKSLLVFTHSGDVYALEELKSDASNRVFQTRPPDPGMESRSTSLQVEVALNR
Ga0307475_100281396	F081559	GAG	MLTNQEPDWNIDDLTDTEIYAAIRYLEADPRTKDKQDANDQDKDNGVVICVGLYTLLLGCLAFLWFYWR
Ga0307475_100281398	F004875	AGGA	MRTFSTFVLATLRAGALVSVVLLLSGLGLAQKVVTARATIPFNFWAQGHEFQAGDYVFDNEVPGSASIHREGTNSGIGVSIILYAVPEEKENPRVIFVRRDEKYCLVELWGVQDRHVVTAEFQHRGEASEQQRQVPLTIVESQDE