Scaffold Ga0307477_10442146

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10442146
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 888
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006594	Metagenome / Metatranscriptome	369	Y
F012405	Metagenome / Metatranscriptome	281	Y
F062993	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_104421461	F062993	N/A	VGDGIRLTSQGQAPVKVLDAELHAKAVAPGDTTWGLVAFEWPARTNGPAVLKFAFPSDGAGEVSAVLVL
Ga0307477_104421462	F006594	N/A	MEQELEITAESVLHMVRTQTRSPIHQEAAGIQTNSAARIVELFRGRFGKAYDAGIRKRLSNLFLEPANPFDVKARRQFRQEAIVLGTFILTALALALYFNLKAIAR
Ga0307477_104421463	F012405	AGG	MTRSKEPLLIRMLRRGEDAGLLVSAAALMLVEMGYVAWLERLPALPSRAHPAGFLDLPPWHERPRVEVTLLLTVLGGMIAWASWGVFGFMGLKPEGSVALSHREIVYKRLRTAAF