Scaffold Ga0307477_10187025

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10187025
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1442
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000739	Metagenome / Metatranscriptome	913	Y
F001367	Metagenome / Metatranscriptome	713	Y
F018044	Metagenome / Metatranscriptome	237	Y
F070523	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_101870251	F001367	AGGA	MPVVGSSAYNTAGQITSLVRSLLNDSQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDALLVVTAVTQPDTSLQVSITDATAPPNQLPTDLLVPLKIWERPNGSTDDFLEMV
Ga0307477_101870252	F070523	AGGA	VKSDKVSLFPDERAAIHAKLGGILKAGDPAEILLVIILLLALRPLPRRKAPKKKGQPKLP
Ga0307477_101870253	F000739	GAG	MSHLQIWLKGLLAAAISGGAGGVLTGFAAVGIDPQHFNLQSGIGATLRIGAAAALINAVIGVAAYLQKSPLPSE
Ga0307477_101870254	F018044	N/A	GEYEHCFTLESPRGEFVQLTPTAAEHIARAIEWSRKFPQSAKRHQLCEREGREERSYENWAYDLLDDAVPAFHKQPFVTVL