Scaffold Ga0307477_10042955

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307477_10042955

Scaffold Ga0307477_10042955

Overview

Basic Information
Taxon OID	3300031753 Open in IMG/M
Scaffold ID	Ga0307477_10042955 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3106
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005997	Metagenome / Metatranscriptome	384	Y
F050621	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_100429552	F050621	N/A	MDGLSRIPTLFACLITLQFVAVASHDLVDIPGWTHGSQVRTIVGRRKLWLVTLINSIFPGVAAGFAIYFWNIPKPGFVADYWVLYCAVTLASAIAMWYVPYFLGTTEERKNEYLRMYAGTRQVLPPRGDNPRPNLLHVCFHILFAINFVLAVVLRFHSA
Ga0307477_100429553	F005997	GGAGG	MARIRGADPSQQGLLSGLFTRIIYWLVKRKLGRVVMPVQIVANHSRILWGYAQMEQSFVSSHLVDTGLKDLAQLRVATLVGCPF

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