NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000354

Scaffold Ga0307477_10000354


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000354 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54144
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (53.49%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000858Metagenome / Metatranscriptome858Y
F001371Metagenome / Metatranscriptome712Y
F012603Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_1000035411F012603N/AMAQSQLPNEVLREVRDELDPTTPYTHAPASPVSLPDTPVAQTVKVKVTVIDKKFIAVMAALGGAESLRFTTHKLVLDHEFAAGAPWVTSVPANPHLVAKGAAIYAAELLVAYELKKPHSWLPGDRVIRKLWWAYPAAMMAIHIKNGVGSIRTRAPSCSLAECQMP
Ga0307477_1000035439F001371N/AMTRDATIWQALRPAPMKKGPMKQNHASAPLDSLSRLSSSNEMMPPRTEANITKATEPYLEVGLICADRDGNRIRIDRVDRDAGTLSYHFLNDELRVQEGVQDRSIEQFLAGGWYMAASGKSL
Ga0307477_100003544F000858AGGAGMSGNGYLFAAYAATWIIHILYLGTIVSRYWRLKREIEDLKKPSVRS

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