Scaffold Ga0307477_10000037

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000037
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 223748
• Total Scaffold Genes: 187
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 152 (81.28%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002535	Metagenome / Metatranscriptome	551	Y
F003283	Metagenome / Metatranscriptome	496	Y
F004702	Metagenome / Metatranscriptome	427	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_1000003719	F002535	AGGAG	MNREELNWLLQTIKDAETAERFVLAQYKSGRISFQMMADVARERSWINRTANQFLTTAARHSTEYATTELPIAIA
Ga0307477_1000003735	F004702	AGGAG	MKILRKALLTSVLAGICVAVGCGSSPEGKYRDASGGIFAEFKGGKARIALGAYAVDGTYKIEGNKIICRGDFGLMLHSPLVFTINDDGSIDGPRDSMIPRLEKVK
Ga0307477_1000003797	F003283	AGGA	MLIGPKGTEQASIARCSVCGRIGELFELPGRTERCCLECSADLATAILLTTEIDAATLAGRSTNALVSEFGEISSRMLERSQSAELGNG