NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307477_10000027

Scaffold Ga0307477_10000027


Overview

Basic Information
Taxon OID3300031753 Open in IMG/M
Scaffold IDGa0307477_10000027 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)252786
Total Scaffold Genes205 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)147 (71.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001718Metagenome / Metatranscriptome647Y
F004091Metagenome / Metatranscriptome453Y
F006230Metagenome / Metatranscriptome378Y
F008368Metagenome / Metatranscriptome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0307477_10000027186F004091GGAGMKPALFVLCLLSTSAAFAQYLGGTSYISNEPQIYQFASHPAHAAYAPMSQEQNVLAATSYSSAHGERPASDFPQPESVSLGAAARELRQQHAQLKKSPTVWVNQ
Ga0307477_10000027191F006230GAGGMPIRTTRSYALQLAYFVLFVWMHAGAQTNPNRQKPASSPGADYSGMYSFLRDGEFVQLTVEDRGRVTGFVSRYGDSESDRGVFLDHFFKSGKLDGNQLAFTTETVHGVSFEFQGTIDRGEGKSRGDEAYYVLKGTLVENTTDESKKSSSRSREVALKSFPQDMASPREQKK
Ga0307477_1000002756F008368N/AMNKTDSDRIHELCSLIAVEQDPQKFRELCEELNRILGAKRERLQNNKLSDEMSD
Ga0307477_1000002763F001718AGGMTTAWGEILPEKKSDGDGFYYLLAALSGMLAGWLDIKVGDLLLTAMVVLAACMLLGILSPRKPWRWVLLVGVFVPVVEWLAYFFLSQKPERAQIYESFLAFVPGIAGAFGGAMGRVLVDNLFARK
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