Scaffold Ga0307477

Basic Information
Taxon OID	3300031753 Open in IMG/M
Scaffold ID	Ga0307477_10000026 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	253079
Total Scaffold Genes	231 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	188 (81.39%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

253079

Total Scaffold Genes

231 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

188 (81.39%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017681	Metagenome / Metatranscriptome	239	Y
F025234	Metagenome / Metatranscriptome	202	Y
F057058	Metagenome / Metatranscriptome	136	Y
F060162	Metagenome / Metatranscriptome	133	Y
F082997	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_10000026144	F017681	N/A	MLLKMSNIEHFSRCGALHHGAVKTKELSRKQMLSVPCPTCGAAPEEGCVLHTGALRTEPHRDRKLSAAEAVDTKPRKALK
Ga0307477_10000026169	F082997	GGAG	MAVSTPAAYGMYPHDVELHQVVQALNQSGFGKEDICMMVSPSHPIATTVREASILNADPGASAIAAGLIGWLMKFGAVMIPTVGLYIRSQAFLQALGVRKDSPGLRGNSRALVGLGFSEGDALRFERQLREMGVLVYVTCSEGERTTRAIELLRGTGARETATLGKEVALEAVA
Ga0307477_10000026182	F060162	GGAGG	MNMNVGWQELYQAAMLELRPDELRRRIDDAEKAIQQRIVEFTQNDSSSEEERRAIDDALRGLRALASTECKPPLSTHSGLAPLP
Ga0307477_10000026189	F025234	AGGAG	MRRDDLMKADLFSEILLLGSGVAIAVALVVVVVAALTSAAGLQ
Ga0307477_1000002663	F057058	GGGGG	LLSRKAYSGSIRDRRVKSMTRMRKIRLALLVFGTSICAAAQNSSQSQPETTPAPAPAFGQNAPVLNPENPPVSGLDEPGLDLHTASRSFISPALQVSESADTNGGNQIGNTGLESVTHVLGALDIQQFWPKSDLFLEYLGGGAFYSSPFDARQLQDAGLEAVTRWRTGQVTLRDSFSYLPDGSFQIGFGGDPGLGLISGGLGTGIPGIQQSNGQFGSVGNIPRLANTAMLDAVQALSPVSAITVAGGFGNAHFYDRTNTLINSDQFTAQAGYSHLLSRRDQIGVVYGFQLFQFPQVSGGQIYNHIVNVRWSHTITGRLSLIAGAGPQYTDLQLNGFLSNWSLSARVQLRYKFSHASLIASYEKFTSSGSGFFAGAKTQAARLAFTRPLGRTWEVYGDLGYSHNAKLQAANFGVNASSYDEGSAGAVFRKHLGRSYDFFAAYRFSEVAFNVPVFLSGTGGRISQRHIGTIGVEWHPRPTRI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307477_10000026

Overview

Ecosystem & Geography

Associated Families

Sequences