Scaffold Ga0307477_10000013

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000013
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 296303
• Total Scaffold Genes: 241
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 153 (63.49%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000131	Metagenome / Metatranscriptome	1986	Y
F000262	Metagenome / Metatranscriptome	1428	Y
F000300	Metagenome / Metatranscriptome	1340	Y
F001036	Metagenome / Metatranscriptome	796	Y
F003855	Metagenome / Metatranscriptome	465	Y
F017355	Metagenome / Metatranscriptome	241	Y
F030920	Metagenome / Metatranscriptome	184	Y
F041623	Metagenome / Metatranscriptome	159	N
F056010	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_10000013105	F003855	GGAG	MTTELHLIAALTHNLAEPLTVAQREALQRAVTKIVALGAQVGVNADQMILLLESGLTVGELLEYLAARSGEVA
Ga0307477_10000013174	F001036	GGAGG	MKVPVILFSLVLAGAVFAAMPAGANQGAAEQKEARAAKKETKWQGYVLRIDKDQSMMDIRGGQNPSNDQRKVAFDSSTEWTKLGKPAQHDEFKEASFVIVLGHVDDKGVLHATRIDLRRP
Ga0307477_10000013175	F017355	AGGAGG	MVKKVLTLLFASVLVFGLSALVFAQEGSKPAEGTAVKQDRVEGVVTRSNKDKSTLVVRNRDTNVEKTVQYDSSTQWTSQEHHSKTVNNIDASQVKDDDRVICLGTFDKDGVLHATSISKRLTR
Ga0307477_10000013177	F000300	AGGAG	MVNKLFTLLFASVLVFPLSTAVFAQEAPKEAKAAKPARWEGIVIRVSKDKSTLTVRNVNSTQERTVQYDSSTKWVSQEHGSKKVNDIDSSQVKENDRVIAEGTWGKDGVLQATLISKRLTRL
Ga0307477_10000013190	F000262	AGGA	MLMVASPSLENDRGSRSRVRRLIRFSLVGGVALYFTSTLSCGGVNLGEVQPQDLCQCVPLEPPIADFRHYQKHVPIPNNMTPVETTVDTILSWPQDLIVLPDAPRTGRELQVFHVAQAFLQNVSVNGEDCDVDLEISQTAERNAPRVIVETPVDSEFCSARKNIQAQLAQHGFRLDVEHGGELPQALPADVLGMAFEDFEHNRGSGQVATLWELHPAIVTLLP
Ga0307477_10000013204	F030920	AGGA	MIITFLIAKIILGGYWLMLAPVLFLPLGTVLLSPHVLREIFGYVVLSLAVVFAALGAIFLFTLTLHDAVTVLAGVQAIWLLAAAITLVARNGKQRGSQSQELRTGQSSITR
Ga0307477_1000001329	F056010	AGGAGG	MKRGLGIVMAAVCLGLGASTLWQQPVFASSETATYQLHMEAPQIAQAANGDKVSITGSGVFSVNPKTVSATGTFTSPSSGSGTWVATQLLDFQPYGCGIIFGTPIPPNLCGGKLMLRIVLTDSTSGQQFEGVLWVSCVIGPNPPNSAQEGARLDIVGVNNFNKIVSGDNVYVKTS
Ga0307477_1000001336	F041623	GAGG	MDKINKLFPYPSTKHMWPTPEANQAFADLKVRITDQRVARLLLMLYELDESVAGLEELPKTELSELISSAILGCGFVDPIEERYAIASVLEAIEVNDSMPERS
Ga0307477_1000001382	F000131	GGCGG	MLAAALIVLSMSLPLFADAVSLQALVTPSTTIVKDGRPVTFALYGFIEFKSLAELFRYIESQTQRWNVPGGLDDERRRQLAGELLRRGIESRVISMEDERPLEALLTHTSEELRQALAHVNDPVPPGYGEAFLAVQEKWKHSLNCWSASPSIPGRVLSNWYPIEEGIELYGATYDSTEHFWQAVKYHPDVTLADLTELLGMLTQKDWGPWLARLDSDPKIYLPNAYAVEFLRHNLARERLQWFRDELARHALSANDHARVVQQRGAASFRFSAFEEKALWGDLADVLHLVYTFSLPDDPIRKALGTRHFDAVYLGERRMGFISEEFRSLMLEIWRVKYLKMTRFREVIGSIPMEIRLSHFLNDGDSPDIPIPAYVGYLNQIRELARAR