Scaffold Ga0307477_10000010

Overview

Basic Information

• Taxon OID: 3300031753
• Scaffold ID: Ga0307477_10000010
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 323033
• Total Scaffold Genes: 311
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 223 (71.70%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000219	Metagenome / Metatranscriptome	1551	Y
F012480	Metagenome	280	Y
F013792	Metagenome / Metatranscriptome	268	Y
F048074	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307477_10000010117	F012480	N/A	MNFVHKYVIFMKGDTLDEMAEEALHYSYLYVMRALQEHRSQGRNGEYEAFALELLAMLQRHRYLYTNPPEAPSPD
Ga0307477_10000010121	F048074	GAGG	MARAKVDFQIVNHGTLYLLYPNTRRVKQWVEDNLPQDHMKYADASVVEHRYIADIVDGIQADDLDIAVSRAVFFN
Ga0307477_10000010182	F000219	N/A	MEQSRIQIAIAAGAGALLLVCFFGYLLYLNGHGPILSRSLELDPLSGVPSSISLNPLRDRSSERAAAKYLRIMRDGNCQTQLADMEKDYRKKYAGFICESESRHPLIGWVIVDWEDQPPLRILRYRAKRYNDPSRTSTYEELLSLTLEKQDEDWAVTKYDAMY
Ga0307477_10000010268	F013792	N/A	MSGHDSLAKRLCQVSPYASRIKPLIDLIPEIMERNDQLRPLWTAWRQNATPDLTPRQYFSRYEIKVLCGFVKYLYFASDAFARSARRGR