Scaffold Ga0307389_10704848

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307389_10704848

Scaffold Ga0307389_10704848

Overview

Basic Information
Taxon OID	3300031750 Open in IMG/M
Scaffold ID	Ga0307389_10704848 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-3.R3 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	658
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	-51.9926	Long. (^o)	2.0992	Alt. (m)		Depth (m)	50
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064313	Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307389_107048482	F064313	N/A	GKSGNKYYAKSCARRVVIRRQIAPSKALKVGGYWYKTLDNVNPHARYGKDRGLSDPACHKSQYKRAIPVGWQLAPYNRAILNYPWSTHCLIFKDGKTFGTKSYGINVNCGGPYLAKSGNKYYAKYCSRRVVIRQKAL

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